| City | Region | Population | Latitude | Longitude |
|---|---|---|---|---|
| Mlonggo | Central Java | 33,542 | -6.5333300 | 110.7000000 |
| Tondano | North Sulawesi | 33,317 | 1.3054000 | 124.9126100 |
| Negara | Bali | 33,191 | -8.3569400 | 114.6169400 |
| Tanggulangin | East Java | 32,866 | -7.4995800 | 112.6999200 |
| Jaten | Central Java | 32,378 | -7.5772200 | 110.8975000 |
| Boyolangu | East Java | 32,287 | -8.1181000 | 111.8935000 |
| Gombong | Central Java | 31,965 | -7.6072200 | 109.5141700 |
| Karangasem | Bali | 31,869 | -8.4500000 | 115.6166700 |
| Bandar | North Sumatra | 31,442 | 2.0500000 | 99.7500000 |
| Kutoarjo | Central Java | 31,352 | -7.7169400 | 109.9127800 |
| Karangampel | West Java | 31,234 | -6.4622200 | 108.4519400 |
| Panarukan | East Java | 30,749 | -7.7018100 | 113.9184400 |
| Sidareja | Central Java | 30,313 | -7.4846000 | 108.7923000 |
| Pakisaji | East Java | 30,213 | -8.0665000 | 112.5981000 |
| Selogiri | Central Java | 30,180 | -7.7833300 | 110.8666700 |
| Kuta | Bali | 30,012 | -8.7233200 | 115.1723400 |
| Maros | South Sulawesi | 30,000 | -5.0060000 | 119.5727000 |
| Srandakan | Yogyakarta | 29,529 | -7.9386100 | 110.2505600 |
| Kefamenanu | East Nusa Tenggara | 29,490 | -9.4466700 | 124.4780600 |
| Singojuruh | East Java | 29,418 | -8.3166700 | 114.2333300 |
| Wongsorejo | East Java | 29,193 | -7.9908000 | 114.4009000 |
| Trenggalek | East Java | 29,083 | -8.0764000 | 111.7064100 |
| Lasem | Central Java | 28,948 | -6.6922000 | 111.4527000 |
| Ceper | Central Java | 28,646 | -7.6741700 | 110.6788900 |
| Randudongkal | Central Java | 28,532 | -7.0981000 | 109.3243000 |
| Balapulang | Central Java | 28,483 | -7.0500000 | 109.0833300 |
| Ubud | Bali | 28,373 | -8.5098000 | 115.2654000 |
| Kraksaan | East Java | 28,248 | -7.7584500 | 113.3962400 |
| Jogonalan | Central Java | 28,114 | -7.7036100 | 110.5361100 |
| Mranggen | Central Java | 28,026 | -7.0268000 | 110.5158000 |
| Deli Tua | North Sumatra | 27,940 | 3.5078000 | 98.6839000 |
| Klungkung | Bali | 27,836 | -8.5333300 | 115.4000000 |
| Margasari | Central Java | 27,814 | -7.1000000 | 109.0166700 |
| Sijunjung | West Sumatra | 27,786 | -0.7005000 | 100.9774000 |
| Soe | East Nusa Tenggara | 27,717 | -9.8607100 | 124.2839500 |
| Tomohon | North Sulawesi | 27,624 | 1.3167800 | 124.8037900 |
| Bulakamba | Central Java | 27,367 | -6.8748000 | 108.9559000 |
| Demak | Central Java | 27,251 | -6.8909000 | 110.6396000 |
| Paciran | East Java | 27,072 | -6.8766600 | 112.3760600 |
| Babat | East Java | 27,038 | -7.1128200 | 112.1635400 |
| Stabat | North Sumatra | 26,862 | 3.7333500 | 98.4502500 |
| Driyorejo | East Java | 26,827 | -7.3659000 | 112.6219000 |
| Muntok | Bangka–Belitung Islands | 26,709 | -2.0671900 | 105.1622800 |
| Tayu | Central Java | 26,413 | -6.5397000 | 111.0518000 |
| Ngunut | East Java | 26,297 | -8.1058000 | 112.0159100 |
| Colomadu | Central Java | 26,274 | -7.5333300 | 110.7500000 |
| Wanaraja | West Java | 26,240 | -7.1749000 | 107.9808000 |
| Welahan | Central Java | 26,163 | -6.8000000 | 110.7166700 |
| Bireun | Aceh | 25,793 | 5.2030000 | 96.7009000 |
| Pangkalan Brandan | North Sumatra | 25,542 | 4.0238000 | 98.2782000 |
| Soko | East Java | 25,494 | -7.4831500 | 112.4270400 |
| Teluk Nibung | North Sumatra | 25,146 | 3.0010000 | 99.8164000 |
| Tanjungtiram | North Sumatra | 25,118 | 4.0613000 | 98.3699000 |
| Seririt | Bali | 25,000 | -8.1928000 | 114.9388000 |
| Sabang | Aceh | 24,519 | 5.8896900 | 95.3164400 |
| Delanggu | Central Java | 24,440 | -7.6166700 | 110.6833300 |
| Prigen | East Java | 24,164 | -7.6833300 | 112.6166700 |
| Pundong | Yogyakarta | 24,081 | -7.9522200 | 110.3486100 |
| Kalianget | East Java | 23,897 | -7.0537000 | 113.9424400 |
| Ngemplak | Central Java | 23,750 | -7.5497200 | 110.7163900 |
| Trucuk | Central Java | 23,584 | -7.7183300 | 110.6588900 |
| Mojoagung | East Java | 23,534 | -7.5666700 | 112.3500000 |
| Kroya | Central Java | 23,255 | -7.6330600 | 109.2461100 |
| Dampit | East Java | 23,094 | -8.2116200 | 112.7493400 |
| Ngoro | East Java | 22,871 | -7.6838600 | 112.2580400 |
| Gambiran Satu | East Java | 22,525 | -8.3939000 | 114.1464000 |
| Kamal | East Java | 22,515 | -7.1677800 | 112.7191700 |
| Gongdanglegi Kulon | East Java | 22,468 | -8.1752900 | 112.6359400 |
| Ngawi | West Java | 22,412 | -7.4038000 | 111.4461000 |
| Kebonarun | Central Java | 21,745 | -7.7002800 | 110.5630600 |
| Manismata | West Kalimantan | 18,888 | -2.4666700 | 111.0333300 |
| Sigli | Aceh | 17,504 | 5.3848000 | 95.9609000 |
| Tongging | North Sumatra | 16,000 | 2.8985000 | 98.5231000 |
| Mamuju | West Sulawesi | 15,000 | -2.6805600 | 118.8861100 |
| Sinabang | Aceh | 15,000 | 2.4803000 | 96.3801000 |
| Labuan Lombok | West Nusa Tenggara | 10,000 | -8.5000000 | 116.6666700 |
| Legian | Bali | 10,000 | -8.7041500 | 115.1702800 |
| Lembar | West Nusa Tenggara | 10,000 | -8.7264000 | 116.0744000 |
| Parapat | North Sumatra | 10,000 | 2.6630000 | 98.9349000 |
| Tobelo | North Maluku | 10,000 | 1.7283700 | 128.0094800 |
| Tomok Bolon | North Sumatra | 10,000 | 2.6521000 | 98.8608000 |
| Sembakung | East Kalimantan | 8,098 | 3.8166700 | 117.2500000 |
| Laikit, Laikit II (Dimembe) | North Sulawesi | 8,000 | 1.4883300 | 124.9744400 |
| Bejubang Dua | Jambi | 7,957 | -1.7923000 | 103.3167000 |
| Munduk | Bali | 6,200 | -8.2686600 | 115.0794700 |
| Pototano | West Nusa Tenggara | 5,000 | -8.4126000 | 117.4811000 |
| Sape | 5,000 | -8.5666700 | 118.9833300 | |
| Seminyak town | Bali | 5,000 | -8.6888300 | 115.1599800 |
| Senggigi | West Nusa Tenggara | 5,000 | -8.4919000 | 116.0424000 |
| Tuktuk Sonak | North Sumatra | 5,000 | 2.6689000 | 98.8576000 |
| Biak | Papua | 4,537 | -1.1767000 | 136.0820000 |
| Insrom | Papua | 3,452 | -1.1447300 | 136.0313400 |
| Nusa Dua | Bali | 2,500 | -8.8004700 | 115.2334100 |
| Banjar Wangsian | Bali | 2,353 | -8.4949700 | 115.4234200 |
| Nusa Dua | East Nusa Tenggara | 2,345 | -9.5980600 | 123.7702800 |
| Ambarita | North Sumatra | 2,000 | 2.6814000 | 98.8311000 |
| Komodo | East Nusa Tenggara | 2,000 | -8.5895000 | 119.4913000 |
| Gili Air | West Nusa Tenggara | 1,800 | -8.3578300 | 116.0824000 |
| Jimbaran | Bali | 1,785 | -8.7909300 | 115.1600600 |
| Gili Trawangan | Aceh | 1,500 | -8.3489700 | 116.0370000 |